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PASNP.net: Pan Asia SNP (PASNP) bioinformatics database page
 

 

News: 20100707:  New mailing lists have been created : pasnp@biomaillist.com

News: 20091211: The PASNP initiative paper was published in Science. 20091211

Nature article on PASNP

What is PASNP initiative?

Summary of PASNP research results

 

List of PASNP people
You can put Ethnicity information in
http://bioanthropology.org/


This site aims to help people exchange research results openfreely for Pan-Asia SNP initiative project.
 

PASNPi participating country sites (Alphabetical)

China  
India  
Indonesia  
Japan  
Korea  
Malaysia  
Nigeria  
Pacific islands  
Philipines  
Taiwan  
Thailand  
Sinapore  
USA  

▣. Previous PASNPi Meetings
2006 Teleconference
2005 October meeting
2005 August 18-19 meeting of bioinformatics and database group in Korea


▣. Usual Participants: (Random order)
PASNP people
Participants to Jejudo meeting 2005. 18-19th. Aug. 
List of Pan-Asia bioinformatics participants 


▣. Open Pan-Asia SNP Bioinformatics/Database group : http://pasnp.org
This is a freely editable open hypertext site for Pan-Asia SNP Database / Bioinformatics construction effort (after Korean meeting on 18th 19th Aug. 2005) 

▣. PASNP DB/Bioinformatics Data registration site                 

▣. CEL File registration ftp site
 ■ Download data from: at bioftp.org BioFtp server.

    PASNP data in DDBJ: http://pasnp.ddbj.nig.ac.jp

▣. Standard formats for PASbase
PASNPI meta data for v. 3.0 release
Affy file format:
KR-KR-123456-1-01

   Delimited by dash (hyphen) 
   First two chars (KR) are for Nation 
  Second two chars are for local ethnic groups. 
  Third 6 digits are for unique serial number for the sample. 
   Fourth 1 digit is for experiment number(serial). For repeated experiments, etc. 
  The last 2 digits are for future technology distinction (future proof measure). 
    If you are in Japan, an example can be: JP-J2-000001-1-01 
A possible
DB schema for genotype database
A data file format for registration

For country codes use the ISO standard two letter code:

For ethnicity use two letter code of your choice

▣. PASNPi Flow Chart
Flow chart 



▣. Related links
Variome

Genomics

PersonalGenome

Omics.org

 

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