PASNP.net: Pan Asia SNP (PASNP) bioinformatics database page
News: 20100707: New mailing lists have been created : firstname.lastname@example.org
News: 20091211: The PASNP initiative paper was published in Science. 20091211
This site aims to help people exchange research results openfreely for Pan-Asia SNP initiative project.
PASNPi participating country sites (Alphabetical)
▣. Previous PASNPi Meetings
2005 October meeting
2005 August 18-19 meeting of bioinformatics and database group in Korea
▣. Usual Participants: (Random order)
Participants to Jejudo meeting 2005. 18-19th. Aug.
List of Pan-Asia bioinformatics participants
▣. Open Pan-Asia SNP Bioinformatics/Database group : http://pasnp.org
This is a freely editable open hypertext site for Pan-Asia SNP Database / Bioinformatics construction effort (after Korean meeting on 18th 19th Aug. 2005)
▣. PASNP DB/Bioinformatics Data registration site
▣. CEL File registration ftp site
■ Download data from: at bioftp.org BioFtp server.
PASNP data in DDBJ: http://pasnp.ddbj.nig.ac.jp
▣. Standard formats for PASbase
PASNPI meta data for v. 3.0 release
Affy file format: KR-KR-123456-1-01
Delimited by dash (hyphen)
First two chars (KR) are for Nation
Second two chars are for local ethnic groups.
Third 6 digits are for unique serial number for the sample.
Fourth 1 digit is for experiment number(serial). For repeated experiments, etc.
The last 2 digits are for future technology distinction (future proof measure).
If you are in Japan, an example can be: JP-J2-000001-1-01
A possible DB schema for genotype database
A data file format for registration
For country codes use the ISO standard two letter code:
For ethnicity use two letter code of your choice